postdoc @ IMIS, 'Athena' RC & adjunct lecturer @ Univ. of Patras

Data management   Bioinformatics   Bibliometrics   Indexing   Cloud computing   Text mining  


BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets. [BMC Bioinformatics 2017]

DIANA-mirExTra v2. 0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. [Nucleic Acids Res 2016]
I Vlachos, T Vergoulis, M Paraskevopoulou, F Lykokanellos, G Georgakilas, P Georgiou, S Chatzopoulos, D Karagkouni, F Christodoulou, T Dalamagas, A Hatzigeorgiou

DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. [Nucleic Acids Res 2016]
M Paraskevopoulou, I Vlachos, D Karagkouni, G Georgakilas, I Kanellos, T Vergoulis, K Zagganas, P Tsanakas, E Floros, T Dalamagas, A Hatzigeorgiou

DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. [Nucleic Acids Res 2016]
G Georgakilas, I Vlachos, K Zagganas, T Vergoulis, M Paraskevopoulou, I Kanellos, P Tsanakas, D Dellis, A Fevgas, T Dalamagas, A Hatzigeorgiou

MirPub v2: Towards ranking and refining miRNA publication search results. [TPDL 2015]
I Kanellos, V Vlachokyriakou, T Vergoulis, G Georgakilas, Y Vassiliou, A Hatzigeorgiou, T Dalamagas

TarMiner: automatic extraction of miRNA targets from literature. [SSDBM 2015]
R Tsoupidi, I Kanellos, T Vergoulis, I Vlachos, A Hatzigeorgiou, T Dalamagas

Publishing Diachronic Life Science Linked Data. [SWAT4LS 2014]
IK Gkirtzou, T Vergoulis, A Hatzigeorgiou, T Sellis, T Dalamagas

MR-microT: A MapReduce-based microRNA target prediction method. [SSDBM 2014]
I. Kanellos, T. Vergoulis, D. Sacharidis, T. Dalamagas, A. Hatzigeorgiou, S. Sartzetakis, T. Sellis

DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. [Nucleic Acids Res. 2013]
Paraskevopoulou MD, Georgakilas G, Kostoulas N, Vlachos IS, Vergoulis T, Reczko M, Filippidis C, Dalamagas T, Hatzigeorgiou AG

DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. [Nucleic Acids Res. 2012]
I. S. Vlachos, N. Kostoulas, T. Vergoulis, G. Georgakilas, M. Reczko, M. Maragkakis, M. D. Paraskevopoulou, K. Prionidis, T. Dalamagas, A. G. Hatzigeorgiou

TARCLOUD: A Cloud-based platform to support miRNA target prediction. [SSDBM 2012]
T. Vergoulis, M. Alexakis, T. Dalamagas, M. Maragkakis, A. G. Hatzigeorgiou, T. Sellis

Approximate Regional Sequence Matching for Genomic Databases. [VLDB Journal 2012]
T. Vergoulis, T. Dalamagas, D. Sacharidis, T. Sellis

Tarbase 6.0: Capturing the Exponential Growth of miRNA Targets with Experimental Support. [Nucleic Acids Res. 2012]
T. Vergoulis, I. Vlachos, P. Alexiou, G. Georgakilas, M. Maragkakis, M. Reczko, S. Gerangelos, N. Koziris, T. Dalamagas, AG Hatzigeorgiou

DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association. [Nucleic Acids Res. 2011]
M. Maragkakis, T. Vergoulis, P. Alexiou, M. Reczko, K. Plomaritou, M. Gousis, K. Kourtis, N. Koziris, T. Dalamagas, AG. Hatzigeorgiou

miRGen 2.0: a database of microRNA genomic information and regulation. [Nucleic Acids Res. 2010]
P. Alexiou, T. Vergoulis, M. Gleditzsch, G. Prekas, T. Dalamagas, M. Megraw, I. Grosse, T. Sellis, A.G. Hatzigeorgiou

Accurate microRNA target prediction correlates with protein repression levels. [BMC Bioinformatics 2009]
M. Maragkakis, P. Alexiou, G. Papadopoulos, M. Reczko, T. Dalamagas, G. Giannopoulos, G. Goumas, E. Koukis, K. Kourtis,V. Simossis, P. Sethupathy, T. Vergoulis, N. Koziris, T. Sellis, P. Tsanakas, A. Hatzigeorgiou

DIANA-microT web server: elucidating microRNA functions through target prediction. [Nucleic Acids Res. 2009]
M. Maragkakis, M. Reczko, V. A. Simossis, P. Alexiou, G. L. Papadopoulos, T. Dalamagas, G. Giannopoulos, G. Goumas, E. Koukis, K. Kourtis, T. Vergoulis, N. Koziris, T. Sellis, P. Tsanakas, and A. G. Hatzigeorgiou